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BRENDA support
Fulltext Search ontologies
(tissue, processes, functions, components)
Enter your searchterm (use
AND
,
OR
,
AND NOT
for simple Boolean queries)
contains
exact
begins with
ends with
use * as wildcard
regular expression
Search in all ontologies
or
search only in
selected ontologies
anatomy
BTO (BRENDA Tissue Ontology)
CAVEman: Human Anatomy based on Terminologia Anatomica
Mouse adult gross anatomy
Fungal gross anatomy
Arabidopsis gross anatomy
Plant Structure Ontology
Zebrafish anatomy and development
Drosophila gross anatomy
Dictyostelium discoideum anatomy
Mosquito gross anatomy
Maize gross anatomy
others
SCOP (Structural Classification of Proteins)
CATH (Protein Structure Classification Database)
Medical Subject Headings (MeSH)
Gene ontology
FlyBase Controlled Vocabulary
chemical
Chemical entities of biological interest
Physico-chemical process
Physical-chemical methods and properties
development
Cereal plant trait
Drosophila development
Cereals growth and developmental stage
Arabidopsis development
Human dev. anatomy, abstract version
Medaka fish anatomy and development
Mouse gross anatomy and development
genomic and proteomic
Protein-protein interaction
Sequence types and features
phenotype
Mammalian phenotype
Phenotypic qualities
Mouse pathology
Plant environmental conditions
Environment Ontology
(hold the ctrl-key to select more than one field)
Examples
Click
to start the examples
Different search modes
Click the icons to start example search!
link
Description
exact
Find
exact
'liver'
in all ontologies
contains
Find all fields which
contains
'apoptosis'
in all ontologies
begins with
Find all fields which
begins with
'alpha'
in all ontologies
ends with
Find all fields which
ends with
'hydrogenase'
in all ontologies
use * as wildcard
Use the search mode
use * as wildcard
to find e.g. all fields beginning with two characters (_) followed by phospho, any characters and ends with activity =>
'__phospho*activity'
in all ontologies
regular expression
This search mode is definitely an
expert mode
. If you are not familiar with regular expressions read an introduction at
wikipedia
.
Here a simple example '(reductase|dehydrogenase).*NAD([(]P[)])?'
Use
'AND', 'OR, or 'AND NOT'
as logical links between search terms
Use
'AND', 'OR, or 'AND NOT'
(always in capitals) to restrict or expand your search. For example you can search for cell OR brain AND NOT wall
Search in selected ontologies
You can restrict your search to selected ontologies. Search e.g. fields with
'contains'
liver only in tissues and cellular components