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2-(dimethylsulfonio)propanoate + tetrahydrofolate
2-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
2-(dimethylsulfonio)propanoate + tetrahydrofolate
2-(methylthio)propanoate + 5-methyltetrahydrofolate
3-(S,S-dimethylsulfonio)propanoate + tetrahydrofolate
3-(methylthio)propanoate + 5-methyltetrahydrofolate
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
additional information
?
-
2-(dimethylsulfonio)propanoate + tetrahydrofolate
2-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
?
2-(dimethylsulfonio)propanoate + tetrahydrofolate
2-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
enzyme exhibits strict substrate specificity for 2-(dimethylsulfonio)propanoate
-
-
?
2-(dimethylsulfonio)propanoate + tetrahydrofolate
2-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
DmdA catalyzes a redox-neutral methyl transfer reaction to produce 5-methyltetrahydrofolate
-
-
?
2-(dimethylsulfonio)propanoate + tetrahydrofolate
2-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
enzyme exhibits strict substrate specificity for 2-(dimethylsulfonio)propanoate
-
-
?
2-(dimethylsulfonio)propanoate + tetrahydrofolate
2-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
enzyme exhibits strict substrate specificity for 2-(dimethylsulfonio)propanoate
-
-
?
2-(dimethylsulfonio)propanoate + tetrahydrofolate
2-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
?
2-(dimethylsulfonio)propanoate + tetrahydrofolate
2-(methylthio)propanoate + 5-methyltetrahydrofolate
-
-
-
r
2-(dimethylsulfonio)propanoate + tetrahydrofolate
2-(methylthio)propanoate + 5-methyltetrahydrofolate
-
-
-
r
3-(S,S-dimethylsulfonio)propanoate + tetrahydrofolate
3-(methylthio)propanoate + 5-methyltetrahydrofolate
-
-
-
?
3-(S,S-dimethylsulfonio)propanoate + tetrahydrofolate
3-(methylthio)propanoate + 5-methyltetrahydrofolate
-
-
-
?
3-(S,S-dimethylsulfonio)propanoate + tetrahydrofolate
3-(methylthio)propanoate + 5-methyltetrahydrofolate
-
-
-
?
3-(S,S-dimethylsulfonio)propanoate + tetrahydrofolate
3-(methylthio)propanoate + 5-methyltetrahydrofolate
-
-
-
-
?
3-(S,S-dimethylsulfonio)propanoate + tetrahydrofolate
3-(methylthio)propanoate + 5-methyltetrahydrofolate
-
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
-
?
additional information
?
-
marine bacterioplankton regulate sulfur flux by converting the precursor dimethylsulfoniopropionate either to dimethylsulfide or to sulfur compounds that are not climatically active
-
-
?
additional information
?
-
-
no detectable demethylase activity with glycine betaine, dimethyl glycine, methylmercaptopropionate, methionine, or dimethylsulfonioacetate. Less than 1% activity is found with dimethylsulfoniobutanoate and dimethylsulfoniopentanoate
-
-
?
additional information
?
-
no detectable demethylase activity with glycine betaine, dimethyl glycine, methylmercaptopropionate, methionine, or dimethylsulfonioacetate. Less than 1% activity is found with dimethylsulfoniobutanoate and dimethylsulfoniopentanoate
-
-
?
additional information
?
-
-
strict substrate specificity for dimethylsulfoniopropionate. No detectable demethylase activity with glycine betaine,dimethyl glycine, methylmercaptopropionate, methionine, or dimethylsulfonioacetate and less than 1% activity with dimethylsulfoniobutanoate and dimethylsulfoniopentanoate
-
-
?
additional information
?
-
strict substrate specificity for dimethylsulfoniopropionate. No detectable demethylase activity with glycine betaine,dimethyl glycine, methylmercaptopropionate, methionine, or dimethylsulfonioacetate and less than 1% activity with dimethylsulfoniobutanoate and dimethylsulfoniopentanoate
-
-
?
additional information
?
-
assay metod, overview. The substrate THF and product 5-methyl-THF are labile under aerobic conditions, oxidation of THF is irreversible and results in the release of 4-aminobenzoyl glutamate, essentially breaking the molecule in half. Half-life of THF in solution at pH 7.0 is about 40 min. DTT can stabilize THF in solution
-
-
-
additional information
?
-
-
no detectable demethylase activity with glycine betaine, dimethyl glycine, methylmercaptopropionate, methionine, or dimethylsulfonioacetate. Less than 1% activity is found with dimethylsulfoniobutanoate and dimethylsulfoniopentanoate
-
-
?
additional information
?
-
no detectable demethylase activity with glycine betaine, dimethyl glycine, methylmercaptopropionate, methionine, or dimethylsulfonioacetate. Less than 1% activity is found with dimethylsulfoniobutanoate and dimethylsulfoniopentanoate
-
-
?
additional information
?
-
-
strict substrate specificity for dimethylsulfoniopropionate. No detectable demethylase activity with glycine betaine,dimethyl glycine, methylmercaptopropionate, methionine, or dimethylsulfonioacetate and less than 1% activity with dimethylsulfoniobutanoate and dimethylsulfoniopentanoate
-
-
?
additional information
?
-
strict substrate specificity for dimethylsulfoniopropionate. No detectable demethylase activity with glycine betaine,dimethyl glycine, methylmercaptopropionate, methionine, or dimethylsulfonioacetate and less than 1% activity with dimethylsulfoniobutanoate and dimethylsulfoniopentanoate
-
-
?
additional information
?
-
assay metod, overview. The substrate THF and product 5-methyl-THF are labile under aerobic conditions, oxidation of THF is irreversible and results in the release of 4-aminobenzoyl glutamate, essentially breaking the molecule in half. Half-life of THF in solution at pH 7.0 is about 40 min. DTT can stabilize THF in solution
-
-
-
additional information
?
-
no detectable demethylase activity with glycine betaine, dimethyl glycine, methylmercaptopropionate, methionine, or dimethylsulfonioacetate. Less than 1% activity is found with dimethylsulfoniobutanoate and dimethylsulfoniopentanoate
-
-
?
additional information
?
-
-
no detectable demethylase activity with glycine betaine, dimethyl glycine, methylmercaptopropionate, methionine, or dimethylsulfonioacetate. Less than 1% activity is found with dimethylsulfoniobutanoate and dimethylsulfoniopentanoate
-
-
?
additional information
?
-
strict substrate specificity for dimethylsulfoniopropionate. No detectable demethylase activity with glycine betaine, dimethyl glycine, methylmercaptopropionate, methionine, or dimethylsulfonioacetate and less than 1% activity with dimethylsulfoniobutanoate and dimethylsulfoniopentanoate
-
-
?
additional information
?
-
-
strict substrate specificity for dimethylsulfoniopropionate. No detectable demethylase activity with glycine betaine, dimethyl glycine, methylmercaptopropionate, methionine, or dimethylsulfonioacetate and less than 1% activity with dimethylsulfoniobutanoate and dimethylsulfoniopentanoate
-
-
?
additional information
?
-
assay metod, overview. The substrate THF and product 5-methyl-THF are labile under aerobic conditions, oxidation of THF is irreversible and results in the release of 4-aminobenzoyl glutamate, essentially breaking the molecule in half. Half-life of THF in solution at pH 7.0 is about 40 min. DTT can stabilize THF in solution
-
-
-
additional information
?
-
assay metod, overview. The substrate THF and product 5-methyl-THF are labile under aerobic conditions, oxidation of THF is irreversible and results in the release of 4-aminobenzoyl glutamate, essentially breaking the molecule in half. Half-life of THF in solution at pH 7.0 is about 40 min. DTT can stabilize THF in solution
-
-
-
additional information
?
-
assay metod, overview. The substrate THF and product 5-methyl-THF are labile under aerobic conditions, oxidation of THF is irreversible and results in the release of 4-aminobenzoyl glutamate, essentially breaking the molecule in half. Half-life of THF in solution at pH 7.0 is about 40 min. DTT can stabilize THF in solution
-
-
-
additional information
?
-
marine bacterioplankton regulate sulfur flux by converting the precursor dimethylsulfoniopropionate either to dimethylsulfide or to sulfur compounds that are not climatically active
-
-
?
additional information
?
-
-
no substrate: betaine. Reaction does not require ATP or reductive activation by titanium(III)-nitrilotriacetic acid
-
-
?
additional information
?
-
-
no substrate: betaine. Reaction does not require ATP or reductive activation by titanium(III)-nitrilotriacetic acid
-
-
?
Please wait a moment until the data is sorted. This message will disappear when the data is sorted.
2-(dimethylsulfonio)propanoate + tetrahydrofolate
2-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
additional information
?
-
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
-
?
S,S-dimethyl-beta-propiothetin + tetrahydrofolate
3-(methylsulfanyl)propanoate + 5-methyltetrahydrofolate
-
-
-
-
?
additional information
?
-
marine bacterioplankton regulate sulfur flux by converting the precursor dimethylsulfoniopropionate either to dimethylsulfide or to sulfur compounds that are not climatically active
-
-
?
additional information
?
-
marine bacterioplankton regulate sulfur flux by converting the precursor dimethylsulfoniopropionate either to dimethylsulfide or to sulfur compounds that are not climatically active
-
-
?
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Please wait a moment until the data is sorted. This message will disappear when the data is sorted.
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gene dmdA
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brenda
in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, genetic cluster identification from 578 dmdA sequences
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-
brenda
-
-
-
brenda
-
-
-
brenda
-
-
-
brenda
in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, OM60 group, genetic cluster OM60-like identification from 578 dmdA sequences
-
-
brenda
in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, clade A, genetic cluster identification from 578 dmdA sequences
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-
brenda
from Monterey Bay, Canada, gene dmdA
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-
brenda
-
UniProt
brenda
-
UniProt
brenda
-
UniProt
brenda
-
-
-
brenda
in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, OM60 group, genetic cluster OM60-like identification from 578 dmdA sequences
-
-
brenda
-
-
-
brenda
-
-
-
brenda
-
-
-
brenda
pelagibacteraceae, strains HTCC1002 and HTCC1062, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, OM60 group, clade E, genetic cluster identification from 578 dmdA sequences
-
-
brenda
pelagibacteraceae, strains HTCC1002 and HTCC1062, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, OM60 group, clade E, genetic cluster identification from 578 dmdA sequences
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-
brenda
-
UniProt
brenda
gene dmdA
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-
brenda
gene dmda or SAR11_0246
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-
brenda
HTCC1062
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-
brenda
pelagibacteraceae, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, SAR11 group, clade C, genetic cluster identification from 578 dmdA sequences
-
-
brenda
pelagibacteraceae, strains HTCC1002 and HTCC1062, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, SAR11 group, clade D, genetic cluster identification from 578 dmdA sequences
-
-
brenda
-
UniProt
brenda
HTCC1062
-
-
brenda
gene dmdA
-
-
brenda
pelagibacteraceae, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, SAR11 group, clade C, genetic cluster identification from 578 dmdA sequences
-
-
brenda
gene dmdA
-
-
brenda
pelagibacteraceae, in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, SAR11 group, clade B, genetic cluster identification from 578 dmdA sequences
-
-
brenda
-
-
-
brenda
from Monterey Bay, Canada, gene dmdA
-
-
brenda
gene dmdA
-
-
brenda
in phytoplankton bloom in Gulf of Mexico seawater, gene dmdA, clade A, genetic cluster identification from 578 dmdA sequences
-
-
brenda
-
UniProt
brenda
DSS-3
UniProt
brenda
from Monterey Bay, Canada, gene dmdA
-
-
brenda
Please wait a moment until the data is sorted. This message will disappear when the data is sorted.
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additional information
-
positive correlation of katG expression with gene dmdA but not gene dddP during the period when regulation expression is uncoupled
evolution
DmdA belongs to a diverse family of enzymes, the overall fold of the DmdA is not similar to other enzymes that typically utilize the reduced form of tetrahydrofolate and in fact is a triple domain structure similar to what has been observed for the glycine cleavage T protein or sarcosine oxidase. All other THF binding fold enzymes produce 5,10-methylene-tetrahydrofolate. The relative positioning of Y206 in DmdA is different in comparison to the other THF dependent enzymes
evolution
-
detection of taxon-specific gene expression in Roseobacter sp. HTCC2255 and in situ regulation of the first gene in each DMSP pathway, gene dddP and gene dmdA, that corresponds with shifts in the taxonomy of the phytoplankton community
evolution
-
phylogenetic analysis, multidimensional analysis based on the abundances of dimethylsulfoniopropionate degradation genes and environmental factors reveal that the distribution pattern of these genes is influenced by chlorophyll a concentrations and temperatures. dddP genes, dmdA subclade C/2 genes, and dmdA subclade D genes exhibit significant correlations with the marine Roseobacter clade, SAR11 subgroup Ib, and SAR11 subgroup Ia, respectively. SAR11 subgroups Ia and Ib, which possess dmdA genes, are suggested to be the main potential dimethylsulfoniopropionate consumers
evolution
-
phylogenetic analysis, multidimensional analysis based on the abundances of dimethylsulfoniopropionate degradation genes and environmental factors reveal that the distribution pattern of these genes is influenced by chlorophyll a concentrations and temperatures. dddP genes, dmdA subclade C/2 genes, and dmdA subclade D genes exhibit significant correlations with the marine Roseobacter clade, SAR11 subgroup Ib, and SAR11 subgroup Ia, respectively. SAR11 subgroups Ia and Ib, which possess dmdA genes, are suggested to be the main potential dimethylsulfoniopropionate consumers
evolution
-
phylogenetic analysis, multidimensional analysis based on the abundances of dimethylsulfoniopropionate degradation genes and environmental factors reveal that the distribution pattern of these genes is influenced by chlorophyll a concentrations and temperatures. dddP genes, dmdA subclade C/2 genes, and dmdA subclade D genes exhibit significant correlations with the marine Roseobacter clade, SAR11 subgroup Ib, and SAR11 subgroup Ia, respectively. SAR11 subgroups Ia and Ib, which possess dmdA genes, are suggested to be the main potential dimethylsulfoniopropionate consumers
evolution
-
analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within the Roseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview
evolution
-
analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within the Roseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview
evolution
-
analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within theRoseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview
evolution
-
analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within theRoseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview
evolution
-
analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within theRoseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview
evolution
-
analysis of diversity of genes encoding DMSP demethylase (dmdA) and DMSP lyases (dddD, dddL, and dddP) in bacteria in the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay using DMSP degradation gene clone library analysis, overview. Both bacterial dmdA and dddP genes found in the two coves are completely confined to the Roseobacter clade, which indicated that this clade plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay. Diversity and distribution of dmdA genes within theRoseobacter clade, including the genera Litoreibacter, Loktanella, Octadecabacter, Roseobacter, Ruegeria, and Sulfitobacter, phylogenetic tree, overview
evolution
though DmdA is homologous to the glycine cleavage T-protein and shares structural similarity, the mechanism of carbon transfer is more similar to S-adenosyl-methionine (SAM)-dependent methyl-transfer enzymes. DmdA catalyzes the transfer of a methyl group to form 5-methyl-THF, which is analogous to SAM-dependent reactions. The gene dmdA is abundant in marine waters
evolution
though DmdA is homologous to the glycine cleavage T-protein and shares structural similarity, the mechanism of carbon transfer is more similar to S-adenosyl-methionine (SAM)-dependent methyl-transfer enzymes. DmdA catalyzes the transfer of a methyl group to form 5-methyl-THF, which is analogous to SAM-dependent reactions. The gene dmdA is abundant in marine waters
evolution
-
though DmdA is homologous to the glycine cleavage T-protein and shares structural similarity, the mechanism of carbon transfer is more similar to S-adenosyl-methionine (SAM)-dependent methyl-transfer enzymes. DmdA catalyzes the transfer of a methyl group to form 5-methyl-THF, which is analogous to SAM-dependent reactions. The gene dmdA is abundant in marine waters
-
evolution
-
detection of taxon-specific gene expression in Roseobacter sp. HTCC2255 and in situ regulation of the first gene in each DMSP pathway, gene dddP and gene dmdA, that corresponds with shifts in the taxonomy of the phytoplankton community
-
evolution
-
though DmdA is homologous to the glycine cleavage T-protein and shares structural similarity, the mechanism of carbon transfer is more similar to S-adenosyl-methionine (SAM)-dependent methyl-transfer enzymes. DmdA catalyzes the transfer of a methyl group to form 5-methyl-THF, which is analogous to SAM-dependent reactions. The gene dmdA is abundant in marine waters
-
evolution
-
phylogenetic analysis, multidimensional analysis based on the abundances of dimethylsulfoniopropionate degradation genes and environmental factors reveal that the distribution pattern of these genes is influenced by chlorophyll a concentrations and temperatures. dddP genes, dmdA subclade C/2 genes, and dmdA subclade D genes exhibit significant correlations with the marine Roseobacter clade, SAR11 subgroup Ib, and SAR11 subgroup Ia, respectively. SAR11 subgroups Ia and Ib, which possess dmdA genes, are suggested to be the main potential dimethylsulfoniopropionate consumers
-
evolution
-
though DmdA is homologous to the glycine cleavage T-protein and shares structural similarity, the mechanism of carbon transfer is more similar to S-adenosyl-methionine (SAM)-dependent methyl-transfer enzymes. DmdA catalyzes the transfer of a methyl group to form 5-methyl-THF, which is analogous to SAM-dependent reactions. The gene dmdA is abundant in marine waters
-
metabolism
-
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
metabolism
-
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
metabolism
-
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
metabolism
-
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
metabolism
-
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
metabolism
-
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
metabolism
-
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
metabolism
-
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
metabolism
-
the bacterial switch is a proposed regulatory point in the global sulfur cycle that routes dimethylsulfoniopropionate to two fundamentally different fates in seawater through genes encoding either the cleavage or demethylation pathway, and affects the flux of volatile sulfur from ocean surface waters to the atmosphere
metabolism
-
the bacterial switch is a proposed regulatory point in the global sulfur cycle that routes dimethylsulfoniopropionate to two fundamentally different fates in seawater through genes encoding either the cleavage or demethylation pathway, and affects the flux of volatile sulfur from ocean surface waters to the atmosphere
metabolism
-
both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments
metabolism
-
both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments
metabolism
-
both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments
metabolism
-
both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments
metabolism
-
both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments
metabolism
-
both bipolar and endemic bacterial DMSP degradation genes exist in polar marine environments
metabolism
-
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
-
metabolism
-
the enzyme catalyzes the first step of the dimethylsulfoniopropionate, DMSP, cleavage pathway. DMSP is a ubiquitous phytoplankton metabolite that is degraded by marine microorganisms by at least two major pathways
-
metabolism
-
the bacterial switch is a proposed regulatory point in the global sulfur cycle that routes dimethylsulfoniopropionate to two fundamentally different fates in seawater through genes encoding either the cleavage or demethylation pathway, and affects the flux of volatile sulfur from ocean surface waters to the atmosphere
-
physiological function
-
DMSP demethylase is responsible for the dimethylsulfoniopropionate assimilation
physiological function
-
DMSP demethylase is responsible for the dimethylsulfoniopropionate assimilation
physiological function
-
DMSP demethylase is responsible for the dimethylsulfoniopropionate assimilation
physiological function
dimethylsulfoniopropionate (DMSP) demethylase is a tetrahydrofolate-dependent enzyme that initiates the DMSP demethylation pathway in marine bacteria. This enzyme is important for understanding of organic sulfur flux from the oceans because it directs the sulfur from DMSP away from dimethylsulfide
physiological function
dimethylsulfoniopropionate (DMSP) demethylase is a tetrahydrofolate-dependent enzyme that initiates the DMSP demethylation pathway in marine bacteria. This enzyme is important for understanding of organic sulfur flux from the oceans because it directs the sulfur from DMSP away from dimethylsulfide
physiological function
-
Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay
physiological function
-
Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay
physiological function
-
Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay
physiological function
-
Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay
physiological function
-
Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay
physiological function
-
Roseobacter plays a significant role in DMSP catabolism in the coastal seawaters of Maxwell Bay
physiological function
-
dimethylsulfoniopropionate (DMSP) demethylase is a tetrahydrofolate-dependent enzyme that initiates the DMSP demethylation pathway in marine bacteria. This enzyme is important for understanding of organic sulfur flux from the oceans because it directs the sulfur from DMSP away from dimethylsulfide
-
physiological function
-
dimethylsulfoniopropionate (DMSP) demethylase is a tetrahydrofolate-dependent enzyme that initiates the DMSP demethylation pathway in marine bacteria. This enzyme is important for understanding of organic sulfur flux from the oceans because it directs the sulfur from DMSP away from dimethylsulfide
-
physiological function
-
DMSP demethylase is responsible for the dimethylsulfoniopropionate assimilation
-
physiological function
-
dimethylsulfoniopropionate (DMSP) demethylase is a tetrahydrofolate-dependent enzyme that initiates the DMSP demethylation pathway in marine bacteria. This enzyme is important for understanding of organic sulfur flux from the oceans because it directs the sulfur from DMSP away from dimethylsulfide
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gene dmdA, expression in Escherichia coli
gene dmdA, functional recombinant expression in Escherichia coli
gene dmdA, genetic cluster identification from 578 dmdA sequences from seawater plankton probes, DNA and amino acid sequence determination and analysis, phylogenetic analysis
gene dmdA, genotyping and expression analysis
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gene dmdA, genotyping and expression analysis in relation to the phytoplankton dynamics in Monterey Bay
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gene dmdA, genotyping in marine bacteria, overview
gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview
synthesized and introduced in trans into Escherichia coli
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gene dmdA, functional recombinant expression in Escherichia coli
gene dmdA, functional recombinant expression in Escherichia coli
gene dmdA, genetic cluster identification from 578 dmdA sequences from seawater plankton probes, DNA and amino acid sequence determination and analysis, phylogenetic analysis
-
gene dmdA, genetic cluster identification from 578 dmdA sequences from seawater plankton probes, DNA and amino acid sequence determination and analysis, phylogenetic analysis
-
gene dmdA, genetic cluster identification from 578 dmdA sequences from seawater plankton probes, DNA and amino acid sequence determination and analysis, phylogenetic analysis
-
gene dmdA, genetic cluster identification from 578 dmdA sequences from seawater plankton probes, DNA and amino acid sequence determination and analysis, phylogenetic analysis
-
gene dmdA, genotyping in marine bacteria, overview
-
gene dmdA, genotyping in marine bacteria, overview
-
gene dmdA, genotyping in marine bacteria, overview
-
gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview
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gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview
-
gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview
-
gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview
-
gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview
-
gene dmdA, genotyping in samples collected from the surface seawater of Ardley Cove and Great Wall Cove in Antarctic Maxwell Bay, clone library construction and sequencing, determination of GenBank IDs KF153913-KF153928 and KF486968-KF487000 for dmdA genes from uncultured bacteria, phylogenetic tree, overview
-
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Reisch, C.R.; Moran, M.A.; Whitman, W.B.
Dimethylsulfoniopropionate-dependent demethylase (DmdA) from Pelagibacter ubique and Silicibacter pomeroyi
J. Bacteriol.
190
8018-8024
2008
Candidatus Pelagibacter ubique, Candidatus Pelagibacter ubique (Q4FP21), Ruegeria pomeroyi (Q5LS57), Ruegeria pomeroyi, Candidatus Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique HTCC1062 (Q4FP21)
brenda
Howard, E.C.; Henriksen, J.R.; Buchan, A.; Reisch, C.R.; Brgmann, H.; Welsh, R.; Ye, W.; Gonzlez, J.M.; Mace, K.; Joye, S.B.; Kiene, R.P.; Whitman, W.B.; Moran, M.A.
Bacterial taxa that limit sulfur flux from the ocean
Science
314
649-652
2006
Candidatus Pelagibacter ubique (Q4FP21), Ruegeria pomeroyi DSS-3 (Q5LS57)
brenda
Howard, E.C.; Sun, S.; Reisch, C.R.; del Valle, D.A.; Buergmann, H.; Kiene, R.P.; Moran, M.A.
Changes in dimethylsulfoniopropionate demethylase gene assemblages in response to an induced phytoplankton bloom
Appl. Environ. Microbiol.
77
524-531
2011
Roseobacter sp., Candidatus Pelagibacter ubique, Rhodobacterales, Flavobacteriaceae, Candidatus Puniceispirillum marinum, Sphingomonadales, Rhodospirillales, unidentified marine bacterioplankton, Candidatus Pelagibacter ubique HTCC7211, unidentified marine bacterioplankton HTCC2080
brenda
Schuller, D.J.; Reisch, C.R.; Moran, M.A.; Whitman, W.B.; Lanzilotta, W.N.
Structures of dimethylsulfoniopropionate-dependent demethylase from the marine organism Pelagabacter ubique
Protein Sci.
21
289-298
2012
Candidatus Pelagibacter ubique, Candidatus Pelagibacter ubique (Q4FP21), Candidatus Pelagibacter ubique HTCC1062 (Q4FP21)
brenda
Jansen, M.; Hansen, T.A.
Tetrahydrofolate serves as a methyl acceptor in the demethylation of dimethylsulfoniopropionate in cell extracts of sulfate-reducing bacteria
Arch. Microbiol.
169
84-87
1998
uncultured bacterium, uncultured bacterium WN
brenda
Cui, Y.; Suzuki, S.; Omori, Y.; Wong, S.K.; Ijichi, M.; Kaneko, R.; Kameyama, S.; Tanimoto, H.; Hamasaki, K.
Abundance and distribution of dimethylsulfoniopropionate degradation genes and the corresponding bacterial community structure at dimethyl sulfide hot spots in the tropical and subtropical pacific ocean
Appl. Environ. Microbiol.
81
4184-4194
2015
Roseobacter sp., Candidatus Pelagibacter ubique, Candidatus Puniceispirillum marinum, Candidatus Pelagibacter ubique HTCC7211, Candidatus Puniceispirillum marinum IMCC1322
brenda
Varaljay, V.A.; Robidart, J.; Preston, C.M.; Gifford, S.M.; Durham, B.P.; Burns, A.S.; Ryan, J.P.; Marin, R.; Kiene, R.P.; Zehr, J.P.; Scholin, C.A.; Moran, M.A.
Single-taxon field measurements of bacterial gene regulation controlling DMSP fate
ISME J.
9
1677-1686
2015
Roseobacter sp., Ruegeria pomeroyi, Roseobacter sp. HTCC 2255
brenda
Zeng, Y.X.; Qiao, Z.Y.
Diversity of dimethylsulfoniopropionate degradation genes reveals the significance of marine Roseobacter clade in sulfur metabolism in coastal areas of antarctic Maxwell Bay
Curr. Microbiol.
76
967-974
2019
Roseobacter sp., Sulfitobacter sp., Litoreibacter sp., Loktanella sp., Octadecabacter sp., Ruegeria sp.
brenda
Reisch, C.R.
Assay and analysis of dimethylsulfoniopropionate demethylase
Methods Enzymol.
605
325-333
2018
Candidatus Pelagibacter ubique (Q4FP21), Ruegeria pomeroyi (Q5LS57), Candidatus Pelagibacter ubique HTCC1062 (Q4FP21), Ruegeria pomeroyi DSM 15171 (Q5LS57), Ruegeria pomeroyi ATCC 700808 (Q5LS57)
brenda