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Information on Organism Phoma sp.

Synonyms:
Phoma sp.;
TaxTree of Organism Phoma sp.
Condensed Tree View
cellular organisms
Eukaryota can be found in Brenda BRENDA pathways(superkingdom)
Opisthokonta can be found in Brenda BRENDA pathways(clade)
Fungi can be found in Brenda BRENDA pathways(kingdom)
Dikarya can be found in Brenda BRENDA pathways(subkingdom)
Ascomycota can be found in Brenda BRENDA pathways(phylum)
saccharomyceta can be found in Brenda (clade)
Pezizomycotina can be found in Brenda BRENDA pathways(subphylum)
leotiomyceta can be found in Brenda (clade)
dothideomyceta can be found in Brenda (clade)
Dothideomycetes can be found in Brenda BRENDA pathways(class)
Pleosporomycetidae can be found in Brenda (subclass)
Pleosporales can be found in Brenda BRENDA pathways(order)
Pleosporineae can be found in Brenda (suborder)
Didymellaceae can be found in Brenda BRENDA pathways(family)
Phoma can be found in Brenda BRENDA pathways(genus)
unclassified Phoma can be found in Brenda
Phoma sp. can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(1,4)-beta-D-xylan degradation
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PWY-6717
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
(S)-reticuline biosynthesis
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1,5-anhydrofructose degradation
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PWY-6992
acetone degradation I (to methylglyoxal)
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PWY-5451
acetone degradation III (to propane-1,2-diol)
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PWY-7466
aerobic respiration I (cytochrome c)
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PWY-3781
aerobic respiration III (alternative oxidase pathway)
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PWY-4302
alanine metabolism
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alpha-tomatine degradation
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PWY18C3-5
Amaryllidacea alkaloids biosynthesis
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PWY-7826
Amino sugar and nucleotide sugar metabolism
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Aminobenzoate degradation
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anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
apratoxin A biosynthesis
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PWY-8361
Arachidonic acid metabolism
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arachidonic acid metabolism
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Betalain biosynthesis
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Biosynthesis of 12-, 14- and 16-membered macrolides
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Biosynthesis of secondary metabolites
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Brassinosteroid biosynthesis
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bupropion degradation
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PWY66-241
C4 and CAM-carbon fixation
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C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
Caffeine metabolism
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Carbon fixation in photosynthetic organisms
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Carbon fixation pathways in prokaryotes
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cellulose and hemicellulose degradation (cellulolosome)
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PWY-6784
cellulose degradation
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cellulose degradation II (fungi)
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PWY-6788
chitin degradation I (archaea)
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PWY-6855
chitin degradation II (Vibrio)
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PWY-6902
chitin degradation III (Serratia)
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PWY-7822
cholesterol biosynthesis
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Citrate cycle (TCA cycle)
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citric acid cycle
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coumarin biosynthesis (via 2-coumarate)
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PWY-5176
Cyanoamino acid metabolism
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Cysteine and methionine metabolism
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d-xylose degradation
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Diterpenoid biosynthesis
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Drug metabolism - cytochrome P450
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erythromycin D biosynthesis
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PWY-7106
ethene biosynthesis V (engineered)
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PWY-7124
Fatty acid degradation
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Fe(II) oxidation
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PWY-6692
firefly bioluminescence
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PWY-7913
formaldehyde assimilation I (serine pathway)
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PWY-1622
formate oxidation to CO2
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PWY-1881
geosmin biosynthesis
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PWY-5950
ginsenoside metabolism
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gluconeogenesis I
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GLUCONEO-PWY
gluconeogenesis III
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PWY66-399
Glyoxylate and dicarboxylate metabolism
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glyoxylate cycle
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GLYOXYLATE-BYPASS
gossypol biosynthesis
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PWY-5773
incomplete reductive TCA cycle
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P42-PWY
Isoquinoline alkaloid biosynthesis
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justicidin B biosynthesis
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PWY-6824
L-dopa and L-dopachrome biosynthesis
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PWY-6481
linamarin degradation
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PWY-3121
Linoleic acid metabolism
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linustatin bioactivation
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PWY-7091
lotaustralin degradation
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PWY-6002
macrolide antibiotic biosynthesis
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malate/L-aspartate shuttle pathway
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MALATE-ASPARTATE-SHUTTLE-PWY
manganese oxidation I
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PWY-6591
matairesinol biosynthesis
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PWY-5466
melatonin degradation I
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PWY-6398
Metabolic pathways
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Metabolism of xenobiotics by cytochrome P450
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Methane metabolism
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methylaspartate cycle
Microbial metabolism in diverse environments
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mixed acid fermentation
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FERMENTATION-PWY
NAD(P)/NADPH interconversion
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PWY-5083
NADH to cytochrome bd oxidase electron transfer I
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PWY0-1334
NADH to cytochrome bo oxidase electron transfer I
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PWY0-1335
neolinustatin bioactivation
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PWY-7092
nicotine degradation IV
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PWY66-201
nicotine degradation V
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PWY66-221
nitrogen remobilization from senescing leaves
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PWY-6549
oxalate degradation III
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PWY-6696
oxalate degradation VI
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PWY-7985
Oxidative phosphorylation
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oxidative phosphorylation
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partial TCA cycle (obligate autotrophs)
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PWY-5913
Phenylpropanoid biosynthesis
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pheomelanin biosynthesis
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PWY-7917
purine nucleobases degradation I (anaerobic)
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P164-PWY
purine nucleobases degradation II (anaerobic)
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PWY-5497
pyruvate fermentation to propanoate I
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P108-PWY
Pyruvate metabolism
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reductive acetyl coenzyme A pathway
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reductive TCA cycle I
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P23-PWY
reductive TCA cycle II
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PWY-5392
Retinol metabolism
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sesamin biosynthesis
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PWY-5469
Sesquiterpenoid and triterpenoid biosynthesis
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Starch and sucrose metabolism
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Steroid biosynthesis
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Steroid hormone biosynthesis
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superpathway of glyoxylate cycle and fatty acid degradation
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PWY-561
taxadiene biosynthesis (engineered)
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PWY-7392
taxol biosynthesis
TCA cycle I (prokaryotic)
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TCA
TCA cycle II (plants and fungi)
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PWY-5690
TCA cycle III (animals)
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PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
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P105-PWY
TCA cycle V (2-oxoglutarate synthase)
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PWY-6969
TCA cycle VI (Helicobacter)
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REDCITCYC
TCA cycle VII (acetate-producers)
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PWY-7254
TCA cycle VIII (Chlamydia)
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TCA-1
Tryptophan metabolism
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Tyrosine metabolism
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vanillin biosynthesis I
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PWY-5665
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
additional information
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optimization of liquid culture conditions for high enzyme expression rates, overview
Manually annotated by BRENDA team
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
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LINKS TO OTHER DATABASES (specific for Phoma sp.)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA